SNP Report

Basic Info

Name	rs3918347 dbSNP Ensembl
Location	chr12:108899544 - 108899544(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.41254
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000549215); downstream_gene_variant(ENST00000547768); intron_variant(ENST00000228476, ENST00000546552, ENST00000547122, ENST00000551281); NMD_transcript_variant(ENST00000547122, ENST00000549215); non_coding_transcript_variant(ENST00000546552)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Prata, D., 2008			data not shown data not shown	Analysis of each SNP individually showed no significant asso...... Analysis of each SNP individually showed no significant association. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DAO	D-amino-acid oxidase	12q24.11	5(1/4/0)

SNPs in LD with rs3918347 (count: 5) View in gBrowse (chr12:108887919..108902275 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6539460	intron_variant; NMD_transcript_variant	0.83[CEU]
rs11114089	downstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs11114084	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.828[CEU]
rs7967441	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.83[CEU]
rs4964770	downstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)