BDgene

SNP Report

Basic Info
Name rs3916971 dbSNP Ensembl
Location chr13:105509652 - 105509652(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.435304
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000448407)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2006 C/T Fisher P-value = 0.0919 for all Fisher P-value = 0.0919 for all Negative
Grigoroiu-Serbanescu, M.,2010 C/T Allelic association analysis: for non-psychotic patients, P-...... Allelic association analysis: for non-psychotic patients, P-value = 0.112, OR(95%CI)=1.64(0.91-2.98); for psychotic patients, P-value = 0.579, OR(95%CI)=0.91(0.67-1.24) More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DAOA-AS1 DAOA antisense RNA 1 13q33.2 Mapped by Literature SNP
DAOA D-amino acid oxidase activator 13q33.2 21(13/7/1)

SNPs in LD with rs3916971 (count: 3) View in gBrowse (chr13:105506038..105510133 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Detera-Wadleigh, S. D., 2006 Fisher P-value = 0.0919 for all, P-value = 0.0919 for SCZ Only Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016