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SNP Report
Name | rs3916966 dbSNP Ensembl | ||
---|---|---|---|
Location | chr13:105458546 - 105458546(1) | ||
Variant Alleles | C/A | ||
Ancestral Allele | A | ||
Minor Allele | C | ||
Minor Allele Frequence | 0.417732 | ||
Functional Annotation | downstream_gene_variant; upstream_gene_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000448407); upstream_gene_variant(ENST00000610818, ENST00000613021) | ||
No. of Studies | 4 (Positive: 1; Negative: 3; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | YES |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Detera-Wadleigh, S. D., 2006 | Fisher P-value = 0.0413 for all, P-value = 0.0683 for SCZ Only | When results are combined across studies and phenotypes, this marker showed significant combined p value. Combined results in schizophrenia are significant for several markers. | Positive |
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Gawlik, M.,2010 | Armitage's trend test:P-value = 0.54 | No significant association was observed. | Negative |