SNP Report

Basic Info

Name	rs391300 dbSNP Ensembl
Location	chr17:2312964 - 2312964(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.445887
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000344595, ENST00000570662, ENST00000572709, ENST00000574987, ENST00000575840, ENST00000576620, ENST00000576848); upstream_gene_variant(ENST00000574229)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Schirmbeck, F., 2007	C/T		no P-value given in the orignial article no P-value given in the orignial article	allele and haplotype frequencies did not differ between case...... allele and haplotype frequencies did not differ between cases and controls More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SRR	serine racemase	17p13	1(0/1/0)

SNPs in LD with rs391300 (count: 1) View in gBrowse (chr17:2305605..2312964 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs4523957		intron_variant; upstream_gene_variant	0.801[CEU]; 0.843[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)