SNP Report

Basic Info

Name	rs3850733 dbSNP Ensembl
Location	chr5:161311310 - 161311310(1)
Variant Alleles	C/A
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.147364
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000274547, ENST00000353437, ENST00000393959, ENST00000517547, ENST00000517901, ENST00000520240)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Perlis, 2008			Mean X²=8.19, P-value = 0.047 in gene-based assoc...... Mean X²=8.19, P-value = 0.047 in gene-based association tests More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GABRB2	gamma-aminobutyric acid (GABA) A receptor, beta 2	5q34	1(1/0/0)

SNPs in LD with rs3850733 (count: 10) View in gBrowse (chr5:161298593..161434948 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs13185229	intron_variant	1.0[CEU]
rs3850732	intron_variant	1.0[CEU]; 0.883[TSI]
rs869647	intron_variant	1.0[CEU]
rs13183893	intron_variant	0.823[CEU]
rs869648	intron_variant	1.0[CEU]
rs13185200	intron_variant	1.0[CEU]
rs12522476	intron_variant	1.0[CEU]
rs17059273	intron_variant	1.0[CEU]; 1.0[TSI]
rs7709316	intron_variant	1.0[CEU]; 1.0[TSI]
rs3901706	intron_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)