SNP Report

Basic Info

Name	rs3846881 dbSNP Ensembl
Location	chr6:37667783 - 37667783(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.412141
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000434837, ENST00000505425, ENST00000515437); upstream_gene_variant(ENST00000478143, ENST00000508399)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Li, J.,2011(a)	C/T		Single SNP analyses: allele, P-value = 0.8846, OR[95%CI]=1.0...... Single SNP analyses: allele, P-value = 0.8846, OR[95%CI]=1.0088[0.8967, 1.1348], genotype, P-value = 0.0088(0.1289 after permutations) for BP More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MDGA1	MAM domain containing glycosylphosphatidylinositol anchor 1	6p21	1(1/0/0)

SNPs in LD with rs3846881 (count: 0) View in gBrowse (chr6:37667783..37667783 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(a)	Single SNP analyses:allele, P-value = 0.5268, OR[95%CI]=1.0395[0.9220, 1.1721], genotype, P-value = 0.0758 for SZ	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(a)	Single SNP analyses:allele, P-value = 0.5698, OR[95%CI]=1.0351[0.9190, 1.1658], genotype, P-value = 0.3786 for MDD	No significant association was observed.	Negative