SNP Report

Basic Info

Name	rs3846306 dbSNP Ensembl
Location	chr4:148210113 - 148210113(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.31849
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000514843); intron_variant(ENST00000342437, ENST00000344721, ENST00000358102, ENST00000504753, ENST00000511528, ENST00000512865, ENST00000625323); NMD_transcript_variant(ENST00000342437); non_coding_transcript_variant(ENST00000504753)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	C/A		Single SNP analyses: Permuted P-value = 0.9032, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.9032, Odds Ratio=0.9836 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NR3C2	nuclear receptor subfamily 3, group C, member 2	4q31	1(1/0/0)

SNPs in LD with rs3846306 (count: 1) View in gBrowse (chr4:148190793..148210113 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs12645409		downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 0.966[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)