BDgene

SNP Report

Basic Info
Name rs3845817 dbSNP Ensembl
Location chr2:65531391 - 65531391(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.440495
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000377977, ENST00000606978); non_coding_transcript_variant(ENST00000377977, ENST00000606978)
No. of Studies 2 (Positive: 0; Negative: 0; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Green, E. K.,2012 C/T BD ImmunoChip:P-value = 0.309,OR = 0.951;ImmunoChip, PGC-BD ...... BD ImmunoChip:P-value = 0.309,OR = 0.951;ImmunoChip, PGC-BD combined data:P-balue = 0.00000145,OR = 0.915 More... Suggestive association was found. Suggestive association was found. Trend
Sklar, P.,2011 C/T Primary GWAS P-value(GC)=0.0000165, OR=0.9; replication P-va...... Primary GWAS P-value(GC)=0.0000165, OR=0.9; replication P-value(1-sided)=0.00898, OR=0.94; Combined GWAS and replication P-value(GC)=0.00000176, OR=0.91 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 0)

SNPs in LD with rs3845817 (count: 14) View in gBrowse (chr2:65520308..65547553 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 14)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016