SNP Report

Basic Info

Name	rs3829773 dbSNP Ensembl
Location	chr17:82263309 - 82263309(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.0241613
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000579308, ENST00000581655, ENST00000583025); intron_variant(ENST00000314028, ENST00000392334, ENST00000398519, ENST00000403276, ENST00000578194, ENST00000579316, ENST00000580061, ENST00000580446, ENST00000581241, ENST00000581660, ENST00000582844, ENST00000584472, ENST00000585026); NMD_transcript_variant(ENST00000403276, ENST00000581660, ENST00000585026); non_coding_transcript_variant(ENST00000578194, ENST00000579316, ENST00000580061, ENST00000581241, ENST00000582844, ENST00000584472)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Matsunaga, S.,2012	A/G		Chi square test:MAF = 0.07,P-value = 0.44,OR = 0.91 Chi square test:MAF = 0.07,P-value = 0.44,OR = 0.91	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CSNK1D	casein kinase 1, delta	17q25	4(2/2/0)
SLC16A3	solute carrier family 16 (monocarboxylate transporter), member 3	17q25.3	Mapped by Literature SNP

SNPs in LD with rs3829773 (count: 0) View in gBrowse (chr17:82263309..82263309 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.09,P-value = 0.26,OR = 1.14	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.07,P-value = 0.39,OR = 0.87	No significant association was observed.	Negative