SNP Report

Basic Info

Name	rs3824872 dbSNP Ensembl
Location	chr11:45884054 - 45884054(1)
Variant Alleles	A/C
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.463858
Functional Annotation	downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000417225, ENST00000443527, ENST00000488962, ENST00000616080, ENST00000616623); upstream_gene_variant(ENST00000241014)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Sjoholm, L. K.,2010	A/C		Association analysis: allele P-value = 0.32, empirical P-val...... Association analysis: allele P-value = 0.32, empirical P-value = 0.37, OR [95% CI]=1.51[0.8621.56]; genotype, Cochran-Armitage trend P-value = 0.32, Logistic regression: Dominant model, P-value = 0.86, OR[95%CI]=1.03[0.7121.49], Recessive model, P-value = 0.025, OR[95%CI]=2.16[1.1024.22] More...	Significant association was found in BD. Significant association was found in BD.	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CRY2	cryptochrome circadian clock 2	11p11.2	5(3/2/0)
MAPK8IP1	mitogen-activated protein kinase 8 interacting protein 1	11p11.2	Mapped by Literature SNP

SNPs in LD with rs3824872 (count: 3) View in gBrowse (chr11:45811384..45884054 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2292912	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs1139266	3_prime_UTR_variant; upstream_gene_variant	0.838[TSI]
rs7951225	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)