BDgene

SNP Report

Basic Info
Name rs3823786 dbSNP Ensembl
Location chr7:78151898 - 78151898(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0255591
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000354212, ENST00000419488, ENST00000519748, ENST00000522391, ENST00000535697, ENST00000626691, ENST00000628980, ENST00000629359, ENST00000636178, ENST00000637282, ENST00000637441, ENST00000637486); NMD_transcript_variant(ENST00000637486)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, X., 2015 A/G P-value=6.44E-21, OR=0.36, 95%CI=0.29-0.45 P-value=6.44E-21, OR=0.36, 95%CI=0.29-0.45 Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 7q21 1(1/0/0)

SNPs in LD with rs3823786 (count: 1) View in gBrowse (chr7:78123917..78151898 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)