BDgene

SNP Report

Basic Info
Name rs3813498 dbSNP Ensembl
Location chr6:108622962 - 108622962(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.338858
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000343882, ENST00000406360); upstream_gene_variant(ENST00000434672)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Magno, L. A.,2011 C/G Chi-square tests: genotype: P-value > 0.05; allele: P-value ...... Chi-square tests: genotype: P-value > 0.05; allele: P-value > 0.05 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SUMO2P8 SUMO2 pseudogene 8 6q21 Mapped by Literature SNP
FOXO3 forkhead box O3 6q21 1(1/0/0)

SNPs in LD with rs3813498 (count: 0) View in gBrowse (chr6:108622962..108622962 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)