BDgene

SNP Report

Basic Info
Name rs3805148 dbSNP Ensembl
Location chr4:55440643 - 55440643(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.376997
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000479384); intron_variant(ENST00000309964, ENST00000381322, ENST00000506103, ENST00000511124, ENST00000513440, ENST00000608091); NMD_transcript_variant(ENST00000506103); non_coding_transcript_variant(ENST00000511124)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kripke, D. F.,2009 C/A TDT: In BP: OR=1.294, CHISQ=7.442, P-value = 0.0064, empiric...... TDT: In BP: OR=1.294, CHISQ=7.442, P-value = 0.0064, empirical P-value = 0.0092, corrected empirical P-value = 0.6291 More... Significant association was observed in the BP group. Significant association was observed in the BP group. Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TMEM165 transmembrane protein 165 4q12 Mapped by Literature SNP
CLOCK clock circadian regulator 4q12 12(5/7/0)

SNPs in LD with rs3805148 (count: 68) View in gBrowse (chr4:55407965..55589624 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 68)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016