SNP Report

Basic Info

Name	rs3798529 dbSNP Ensembl
Location	chr6:34039120 - 34039120(1)
Variant Alleles	A/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.430112
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000609443, ENST00000609915); intron_variant(ENST00000374177, ENST00000374181, ENST00000455714, ENST00000535756, ENST00000538487, ENST00000544773, ENST00000545715, ENST00000609222, ENST00000609278, ENST00000609860); NMD_transcript_variant(ENST00000609278); non_coding_transcript_variant(ENST00000545715, ENST00000609860)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/C		Allelic association: 1st screening: P-value = 0.0063, 2nd sc...... Allelic association: 1st screening: P-value = 0.0063, 2nd screening: P-value = 0.73, total: P-value = 0.064 More...	Significant association was observed in 1st screening and to...... Significant association was observed in 1st screening and total sample. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRM4	glutamate receptor, metabotropic 4	6p21.3	2(2/0/0)

SNPs in LD with rs3798529 (count: 0) View in gBrowse (chr6:34039120..34039120 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)