SNP Report

Basic Info

Name	rs3795432 dbSNP Ensembl
Location	chr1:31357026 - 31357026(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.298323
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000344147, ENST00000373714, ENST00000546109, ENST00000615916, ENST00000616393, ENST00000616859, ENST00000618216, ENST00000627541)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Iwayama, Y., 2010	A/G		allele test P-value = 0.3517, genotype test P-value = 0.2734 allele test P-value = 0.3517, genotype test P-value = 0.2734	None of the 8 SNPs showed association with bipolar disorder None of the 8 SNPs showed association with bipolar disorder	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZCCHC17	zinc finger, CCHC domain containing 17	1p35.2	Mapped by Literature SNP
FABP3	fatty acid binding protein 3, muscle and heart	1p33-p32	2(1/1/0)

SNPs in LD with rs3795432 (count: 4) View in gBrowse (chr1:31357026..31397466 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7537244		0.849[CHB]
rs4949391	downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7551345	intron_variant	1.0[CHB]; 1.0[JPT]
rs12122236		0.849[CHB]; 0.843[CHD]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Iwayama, Y., 2010	allele test P-value = 0.2038, genotype test P-value = 0.4391	None of the 8 SNPs showed association with schizophrenia.	Negative

Overlap with MDD from cross-disorder studies (count: 0)