BDgene

SNP Report

Basic Info
Name rs3771827 dbSNP Ensembl
Location chr2:75134738 - 75134738(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.291733
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sharp S.I., 2014 T/C P-value=0.05, OR=3.28, 95%CI=0.9-11.94 P-value=0.05, OR=3.28, 95%CI=0.9-11.94 Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs3771827 (count: 26) View in gBrowse (chr2:75097228..75147139 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 26)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)