BDgene

SNP Report

Basic Info
Name rs3771809 dbSNP Ensembl
Location chr2:75066620 - 75066620(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.319089
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Perlis, 2008 Mean X2=7.63, P-value = 0.02 in gene-based associ...... Mean X2=7.63, P-value = 0.02 in gene-based association tests More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs3771809 (count: 13) View in gBrowse (chr2:75052795..75070434 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 13)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)