BDgene

SNP Report

Basic Info
Name rs3758354 dbSNP Ensembl
Location chr9:73149649 - 73149649(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.0936502
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000257497, ENST00000415424, ENST00000456643, ENST00000468639)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 C/A Omnibus GWAS Test: P-value = 0.00000331, best-fit model is B...... Omnibus GWAS Test: P-value = 0.00000331, best-fit model is Bipolar II specific More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ANXA1 annexin A1 9q21.13 1(0/0/1)

SNPs in LD with rs3758354 (count: 0) View in gBrowse (chr9:73149649..73149649 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative