BDgene

SNP Report

Basic Info
Name rs3752823 dbSNP Ensembl
Location chr12:19375704 - 19375704(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0770767
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000299275, ENST00000424268, ENST00000429027, ENST00000538972); downstream_gene_variant(ENST00000538714, ENST00000539256)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jamain, S., 2014 A French sample: P-value=2.03E-03, OR=1.58; German sample:Â...... French sample: P-value=2.03E-03, OR=1.58; German sample: P-value=1.70E-04, OR=1.89; Meta-analysis: P-valuemeta=2.09E-06, ORmeta=1.71 More... This SNP showed a difference in allele frequencies at P<5E-0...... This SNP showed a difference in allele frequencies at P<5E-05. More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
AEBP2 AE binding protein 2 12p12.3 1(1/0/0)
PLEKHA5 pleckstrin homology domain containing, family A member 5 12p12 1(1/0/0)

SNPs in LD with rs3752823 (count: 0) View in gBrowse (chr12:19375704..19375704 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)