SNP Report

Basic Info

Name	rs3742290 dbSNP Ensembl
Location	chr13:52029105 - 52029105(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.0800719
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; missense_variant. Polyphen Annotation: benign(ENST00000521776) SIFT Annotation: tolerated(ENST00000521776)
Consequence to Transcript	3_prime_UTR_variant(ENST00000521508, ENST00000523764); downstream_gene_variant(ENST00000519151, ENST00000529080); missense_variant(ENST00000521776)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Strauss, K. A., 2014	A/G		Bipolar 1 disorder: X²=0.2, FBAT P-value=0.349, E...... Bipolar 1 disorder: X²=0.2, FBAT P-value=0.349, EMMAX P-value=0.543; Bipolar spectrum disorder: X¹⁰=0, FBAT P-value=0.722, EMMAX P-value=0.256 More...	No significant associations were observed. No significant associations were observed.	Negative

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
UTP14C	UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	13q12.2-q13.3	1(0/1/0)
NEK5	NIMA-related kinase 5	13q14.2	1(0/1/0)
ALG11	ALG11, alpha-1,2-mannosyltransferase	13q14.3	Mapped by Literature SNP

SNPs in LD with rs3742290 (count: 0) View in gBrowse (chr13:52029105..52029105 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)