BDgene

SNP Report

Basic Info
Name rs362642 dbSNP Ensembl
Location chr7:103609424 - 103609424(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.365615
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000343529, ENST00000424685, ENST00000428762)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Goes, F. S., 2010 T TDT test: P-value = 0.048 OR=1.19[1.00-1.41] for all samples...... TDT test: P-value = 0.048 OR=1.19[1.00-1.41] for all samples, P-value = 0.009 OR=1.35[1.08-1.68] for females, P-value = 0.94 OR=0.99[0.75-1.30] for males. More... nominal significant, but not significant after empirical cor...... nominal significant, but not significant after empirical correction for testing of multiple markers. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RELN reelin 7q22 3(1/2/0)

SNPs in LD with rs362642 (count: 0) View in gBrowse (chr7:103609424..103609424 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)