BDgene

SNP Report

Basic Info
Name rs334555 dbSNP Ensembl
Location chr3:120085289 - 120085289(1)
Variant Alleles G/C
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.0547125
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000264235, ENST00000316626)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saus, E.,2010 C/G association analyses with diagnosis: codominant P-value = 0....... association analyses with diagnosis: codominant P-value = 0.446, dominant P-value = 0.204, recessive P-value = 0.714, additive P-value = 0.223 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GSK3B glycogen synthase kinase 3 beta 3q13.3 8(0/8/0)

SNPs in LD with rs334555 (count: 0) View in gBrowse (chr3:120085289..120085289 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saus, E.,2010 association analyses with diagnosis:codominant P-value = 0.793, dominant P-value = 0.556, recessive P-value = 0.632, additive P-value = 0.506 No significant association was observed. Negative