BDgene

SNP Report

Basic Info
Name rs3128309 dbSNP Ensembl
Location chr1:2174439 - 2174439(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0652955
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000472017); intron_variant(ENST00000378567, ENST00000400921, ENST00000461106, ENST00000478770, ENST00000479263, ENST00000505322); NMD_transcript_variant(ENST00000478770); non_coding_transcript_variant(ENST00000479263, ENST00000505322)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kandaswamy, R.,2012 A/G Association analysis: chi square=3.532, P-value = 0.06 Association analysis: chi square=3.532, P-value = 0.06 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PRKCZ protein kinase C, zeta 1p36.33-p36.2 1(1/0/0)

SNPs in LD with rs3128309 (count: 9) View in gBrowse (chr1:2138661..2186119 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016