SNP Report

Basic Info

Name	rs3099840 dbSNP Ensembl
Location	chrCHR_HSCHR6_MHC_SSTO_CTG1:31453658 - 31453658(1)
Variant Alleles	A/G
Minor Allele	G
Minor Allele Frequence	0.189896
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000414046); non_coding_transcript_exon_variant(ENST00000440087); non_coding_transcript_variant(ENST00000414046, ENST00000440087); upstream_gene_variant(ENST00000460889, ENST00000467369, ENST00000541196, ENST00000419355, ENST00000438873, ENST00000423496, ENST00000447631)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HCP5	HLA complex P5 (non-protein coding)	6p21.3	Mapped by Literature SNP

SNPs in LD with rs3099840 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:31453658..31453658 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)