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SNP Report
Basic Info
| Name | rs3094228 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chrCHR_HSCHR6_MHC_SSTO_CTG1:31452864 - 31452864(1) | ||
| Variant Alleles | T/C | ||
| Ancestral Allele | T | ||
| Minor Allele | C | ||
| Minor Allele Frequence | 0.189097 | ||
| Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant. | ||
| Consequence to Transcript | downstream_gene_variant(ENST00000440087); intron_variant(ENST00000414046); non_coding_transcript_variant(ENST00000414046); upstream_gene_variant(ENST00000460889, ENST00000467369, ENST00000541196, ENST00000419355, ENST00000438873, ENST00000423496, ENST00000447631) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| HCP5 | HLA complex P5 (non-protein coding) | 6p21.3 | Mapped by Literature SNP |
SNPs in LD with rs3094228 (count: 13) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:31372564..31528452 )
Literature-origin SNPs (count: 0)
LD-proxies (count: 13)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Bergen, S. E.,2012 | logistic regression:for SZ full sample, OR=1.31, P-value = 5.96E-06 | No significant association was observed in SZ. | Negative |
Overlap with MDD from cross-disorder studies (count: 0)