BDgene

SNP Report

Basic Info
Name rs3016384 dbSNP Ensembl
Location chr11:132703495 - 132703495(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.490615
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000331898, ENST00000374778, ENST00000524381, ENST00000525412, ENST00000529038, ENST00000541867, ENST00000612177); non_coding_transcript_variant(ENST00000525412, ENST00000529038)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Schanze, D.,2011 C X2 tests: allele P-value = 0.67 for BP. X2 tests: allele P-value = 0.67 for BP. No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
OPCML opioid binding protein/cell adhesion molecule-like 11q25 1(0/1/0)

SNPs in LD with rs3016384 (count: 23) View in gBrowse (chr11:132670041..132703495 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 23)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Schanze, D.,2011 X2 tests:allele P-value = 0.85 for SCZ. No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)