SNP Report

Basic Info

Name	rs2975226 dbSNP Ensembl
Location	chrCHR_HSCHR5_3_CTG1:1382570 - 1382570(-1)
Variant Alleles	T/A
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.371006
Functional Annotation	upstream_gene_variant; downstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000270349); downstream_gene_variant(ENST00000630039, ENST00000629718, ENST00000630461)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Stober, G., 2006	T>A		allelic P-value = 0.10, genotypic P-value = 0.12 allelic P-value = 0.10, genotypic P-value = 0.12	At the 5'-UTR locus of hSLC6A3, no significant allelic or ge...... At the 5'-UTR locus of hSLC6A3, no significant allelic or genotypic differences were observed between index cases and controls. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter), member 3	5p15.3	11(5/6/0)

SNPs in LD with rs2975226 (count: 0) View in gBrowse (chrCHR_HSCHR5_3_CTG1:1382570..1382570 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)