SNP Report

Basic Info

Name	rs2901197 dbSNP Ensembl
Location	chr2:124134429 - 124134429(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.248003
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000423939, ENST00000431078); non_coding_transcript_variant(ENST00000423939)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for Iceland (replication sample): P-value...... Combined analysis: for Iceland (replication sample): P-value = 0.016798, OR=1.18, Stouffer's z value=0.0008 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CNTNAP5	contactin associated protein-like 5	2q14.1	2(0/2/0)

SNPs in LD with rs2901197 (count: 12) View in gBrowse (chr2:124098762..124165241 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1898787	intron_variant	1.0[CEU]
rs11896523	intron_variant; non_coding_transcript_variant	0.96[CEU]
rs2043885	intron_variant; non_coding_transcript_variant	0.816[CEU]
rs1919839	intron_variant	0.88[CEU]; 0.926[TSI]
rs11123021	intron_variant; non_coding_transcript_variant	0.921[CEU]; 0.975[TSI]
rs2699367	intron_variant	0.808[CEU]; 0.926[TSI]
rs1530104	intron_variant	0.808[CEU]; 0.926[TSI]
rs1439134	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs4456715	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[TSI]
rs2043886	intron_variant	0.96[CEU]
rs4340523	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs11896568	intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)