BDgene

SNP Report

Basic Info
Name rs2900433 dbSNP Ensembl
Location chr12:19544697 - 19544697(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.182508
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000398731, ENST00000512223)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jamain, S., 2014 T French sample: P-value=4.13E-04, OR=1.55; German sample:Â...... French sample: P-value=4.13E-04, OR=1.55; German sample: P-value=2.01E-03, OR=1.57; Meta-analysis: P-valuemeta=3.13E-06, ORmeta=1.56 More... This SNP showed a difference in allele frequencies at P<5E-0...... This SNP showed a difference in allele frequencies at P<5E-05. More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
AEBP2 AE binding protein 2 12p12.3 1(1/0/0)
PLEKHA5 pleckstrin homology domain containing, family A member 5 12p12 1(1/0/0)

SNPs in LD with rs2900433 (count: 0) View in gBrowse (chr12:19544697..19544697 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)