BDgene

SNP Report

Basic Info
Name rs2802292 dbSNP Ensembl
Location chr6:108587315 - 108587315(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.46885
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000343882, ENST00000406360)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Magno, L. A.,2011 G/T Chi-square tests: genotype: X2=7.03, P-value = 0....... Chi-square tests: genotype: X2=7.03, P-value = 0.0297; allele: X2=4.30, P-value = 0.0381 More... Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FOXO3 forkhead box O3 6q21 1(1/0/0)

SNPs in LD with rs2802292 (count: 0) View in gBrowse (chr6:108587315..108587315 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016