BDgene

SNP Report

Basic Info
Name rs278865 dbSNP Ensembl
Location chr2:155563980 - 155563980(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.344449
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 A/G Omnibus GWAS Test: P-value > 5E-05 Omnibus GWAS Test: P-value > 5E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NR4A2 nuclear receptor subfamily 4, group A, member 2 2q22-q23 1(0/1/0)

SNPs in LD with rs278865 (count: 0) View in gBrowse (chr2:155563980..155563980 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value = 0.0000246, best-fit model is Schizophrenia specific Suggestive association was found. Trend

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016