BDgene

SNP Report

Basic Info
Name rs2769605 dbSNP Ensembl
Location chr9:85297756 - 85297756(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.376398
No. of Studies 2 (Positive: 0; Negative: 1; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Wang, Z., 2013 G/A allelic P-value=0.648, OR (95 % CI)=0.94 (0.71, 1.24), X allelic P-value=0.648, OR (95 % CI)=0.94 (0.71, 1.24), X2=0.209, df=1; genotypic P-value=0.307, X2=2.364, df=2 More... For SNP rs2769605, the allele or genotype frequencies of BP ...... For SNP rs2769605, the allele or genotype frequencies of BP I patients did not significantly differ from the controls. More... Negative
Smith, E. N.,2009 T AA only: Alelle association: MAF=0.22, Multidimensional scal...... AA only: Alelle association: MAF=0.22, Multidimensional scaling: OR=0.6, P-value = 0.000045; LAMP adjusted: OR=0.61, P-value = 0.000045; Genomic control: OR=0.63, P-value = 0.00015 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 9q22.1 3(1/1/1)

SNPs in LD with rs2769605 (count: 20) View in gBrowse (chr9:85282262..85323736 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 20)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016