BDgene

SNP Report

Basic Info
Name rs2731877 dbSNP Ensembl
Location chr5:36601753 - 36601753(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.496406
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000265113, ENST00000416645, ENST00000504121, ENST00000506725, ENST00000512374, ENST00000513903, ENST00000612708, ENST00000613445)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G G Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0224, Gene-wide P-value = 0.1948 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 5p13 Mapped by Literature SNP

SNPs in LD with rs2731877 (count: 2) View in gBrowse (chr5:36601753..36603527 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)