SNP Report

Basic Info

Name	rs2709778 dbSNP Ensembl
Location	chr7:30627817 - 30627817(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.0888578
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000389266, ENST00000444666, ENST00000470392, LRG_243t1); NMD_transcript_variant(ENST00000444666); non_coding_transcript_variant(ENST00000470392); upstream_gene_variant(ENST00000465748, ENST00000485784, ENST00000496643)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	T/C		Single SNP analyses: Permuted P-value = 0.3771, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.3771, Odds Ratio=0.8478 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CRHR2	corticotropin releasing hormone receptor 2	7p14.3	3(2/1/0)
GARS	glycyl-tRNA synthetase	7p15	Mapped by Literature SNP

SNPs in LD with rs2709778 (count: 0) View in gBrowse (chr7:30627817..30627817 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)