BDgene

SNP Report

Basic Info
Name rs2609653 dbSNP Ensembl
Location chr8:34379474 - 34379474(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0459265
No. of Studies 2 (Positive: 0; Negative: 0; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
The Wellcome Trust Case Control Consortium, 2007 C Trend P-value = 6.86E-06; no genotypic P-value; Heterozygo...... Trend P-value = 6.86E-06; no genotypic P-value; Heterozygote OR (95%CI)=1.43 (1.19-1.71); Homozygote OR (95%CI)=3.62 (1.26-10.44) More... showing moderate evidence of association with BD showing moderate evidence of association with BD Trend
Jiang, Y.,2011 Non-weighted test under H0: P-value(additive)=0.00000687, P-...... Non-weighted test under H0: P-value(additive)=0.00000687, P-value(dominant)=0.000021, P-value(recessive)=0.0141; weighted test under H'0: P-value(additive)=0.0000348, P-value(dominant)=0.0000411, P-value(recessive)=0.0383; logistic regression: P-value(additive)=0.0000157, P-value(dominant)=0.0000462, P-value(recessive)=0.0154 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 0)

SNPs in LD with rs2609653 (count: 1) View in gBrowse (chr8:34294974..34379474 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016