SNP Report

Basic Info

Name	rs2578121 dbSNP Ensembl
Location	chr10:78457451 - 78457451(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.473442
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000421324, ENST00000510550, ENST00000624665, ENST00000634930, ENST00000635422); non_coding_transcript_variant(ENST00000421324, ENST00000510550, ENST00000624665, ENST00000634930, ENST00000635422)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.00043, OR=1.57 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
LINC00856	long intergenic non-protein coding RNA 856	10q22.3	Mapped by Literature SNP

SNPs in LD with rs2578121 (count: 1) View in gBrowse (chr10:78457451..78458211 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs7918709		intron_variant; non_coding_transcript_variant	0.852[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)