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SNP Report
Basic Info
| Name | rs2393595 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr10:60082740 - 60082740(1) | ||
| Variant Alleles | A/G | ||
| Ancestral Allele | A | ||
| Minor Allele | G | ||
| Minor Allele Frequence | 0.0874601 | ||
| Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_variant; splice_region_variant; upstream_gene_variant. | ||
| Consequence to Transcript | downstream_gene_variant(ENST00000365320, ENST00000465749, ENST00000622427); intron_variant(ENST00000280772, ENST00000355288, ENST00000373827, ENST00000503366, ENST00000508449, ENST00000610321, ENST00000616444); non_coding_transcript_variant(ENST00000508449); splice_region_variant(ENST00000280772, ENST00000355288, ENST00000373827, ENST00000503366, ENST00000508449, ENST00000610321, ENST00000616444); upstream_gene_variant(ENST00000373820, ENST00000511043) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | NO | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| ANK3 | ankyrin 3, node of Ranvier (ankyrin G) | 10q21 | 17(13/3/1) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 2)
Overlap with SZ from cross-disorder studies (count: 0)
Overlap with MDD from cross-disorder studies (count: 0)