SNP Report

Basic Info

Name	rs2367911 dbSNP Ensembl
Location	chr7:82156904 - 82156904(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.15635
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000356253, ENST00000356860, ENST00000423588, ENST00000484706, LRG_437t1); non_coding_transcript_variant(ENST00000484706)
No. of Studies	2 (Positive: 0; Negative: 0; Trend: 2)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Smith, E. N.,2011	T/C		Genome-Wide Association: OR=2, P-value = 5.9E-06 Genome-Wide Association: OR=2, P-value = 5.9E-06	Suggestive association was found. Suggestive association was found.	Trend
Winham S.J., 2014			BD+BE: OR=3.29, P-value=1.55E-06; BD-BE: OR=1.69, P-value=0....... BD+BE: OR=3.29, P-value=1.55E-06; BD-BE: OR=1.69, P-value=0.0096 More...	It showed little evidence for association with BD. It showed little evidence for association with BD.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CACNA2D1	calcium channel, voltage-dependent, alpha 2/delta subunit 1	7q21-q22	2(0/0/2)

SNPs in LD with rs2367911 (count: 1) View in gBrowse (chr7:82156904..82162685 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs3801727		intron_variant; non_coding_transcript_variant	0.828[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)