SNP Report

Basic Info

Name	rs2356210 dbSNP Ensembl
Location	chr4:148286559 - 148286559(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.209864
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000342437, ENST00000344721, ENST00000358102, ENST00000504753, ENST00000511528, ENST00000512865, ENST00000625323); NMD_transcript_variant(ENST00000342437); non_coding_transcript_variant(ENST00000504753)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	G/A		Single SNP analyses: Permuted P-value = 0.0234, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.0234, Odds Ratio=0.7315 More...	Significant associations were found . Significant associations were found .	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NR3C2	nuclear receptor subfamily 3, group C, member 2	4q31	1(1/0/0)

SNPs in LD with rs2356210 (count: 5) View in gBrowse (chr4:148247291..148302131 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7689925	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs17581570	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]
rs2883929	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]
rs17581262	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.804[CEU]
rs11936376	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)