BDgene

SNP Report

Basic Info
Name rs2352974 dbSNP Ensembl
Location chr3:49853180 - 49853180(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.400559
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000296471, ENST00000463537, ENST00000475665, ENST00000477224, ENST00000488336); intron_variant(ENST00000331456, ENST00000469027, ENST00000473195, ENST00000473863, ENST00000477546, ENST00000482243, ENST00000482582, ENST00000489948); NMD_transcript_variant(ENST00000473195); non_coding_transcript_variant(ENST00000473863, ENST00000477546, ENST00000489948)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hamshere, M. L.,2009 lambda-corrected Cochran-Armitage trend test: P-value = 8.27...... lambda-corrected Cochran-Armitage trend test: P-value = 8.27E-07 More... one of independently associated SNPs that exceed a significa...... one of independently associated SNPs that exceed a significance threshold of P-value E-05(all of which have good quality clusterplots) More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CAMKV CaM kinase-like vesicle-associated 3p21.31 Mapped by Literature SNP
TRAIP TRAF interacting protein 3p21.31 1(0/0/1)

SNPs in LD with rs2352974 (count: 38) View in gBrowse (chr3:49699132..49886991 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 38)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016