SNP Report

Basic Info

Name	rs2304669 dbSNP Ensembl
Location	chr2:238257022 - 238257022(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.0940495
Functional Annotation	downstream_gene_variant; synonymous_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000355768, ENST00000456601, ENST00000491417); synonymous_variant(ENST00000254657)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kripke, D. F.,2009	G/A		TDT: In BP: OR=0.784, CHISQ=4.349, P-value = 0.037, empirica...... TDT: In BP: OR=0.784, CHISQ=4.349, P-value = 0.037, empirical P-value = 0.0416, corrected empirical P-value = 0.9945 More...	Significant association was observed in the BP group. Significant association was observed in the BP group.	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PER2	period circadian clock 2	2q37.3	7(1/6/0)

SNPs in LD with rs2304669 (count: 1) View in gBrowse (chr2:238257022..238294273 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs4617993		downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.899[CEU]; 0.879[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)