BDgene

SNP Report

Basic Info
Name rs2296983 dbSNP Ensembl
Location chr13:98804907 - 98804907(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.379792
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000339416, ENST00000340449, ENST00000451563); intron_variant(ENST00000376460, ENST00000400228, ENST00000419908, ENST00000442173, ENST00000448493, ENST00000630992); NMD_transcript_variant(ENST00000630992)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 FBAT-e P-value = 0.3029 in NIMH1-2, FBAT-e P-value = 0.3971 ...... FBAT-e P-value = 0.3029 in NIMH1-2, FBAT-e P-value = 0.3971 in NIMH3, FBAT-e P-value = 0.5306 in NIMH4 More... no significant over-transmission of any alleles was detected no significant over-transmission of any alleles was detected Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)

SNPs in LD with rs2296983 (count: 0) View in gBrowse (chr13:98804907..98804907 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)