BDgene

SNP Report

Basic Info
Name rs2279709 dbSNP Ensembl
Location chr8:20178722 - 20178722(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.436102
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000265808, ENST00000276373, ENST00000381608, ENST00000437980, ENST00000440926, ENST00000517776, ENST00000519026, ENST00000522513); NMD_transcript_variant(ENST00000517776); upstream_gene_variant(ENST00000524272)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lohoff, F. W., 2006 C/A genotypic P-value = 0.271, allelic P-value = 0.127 for BPI ;...... genotypic P-value = 0.271, allelic P-value = 0.127 for BPI ; genotypic P-value = 0.322, allelic P-value = 0.159 for BP I psychosis More... Negative
Yosifova, A.,2009 G/T Allelic association: P-value = 0.16 Allelic association: P-value = 0.16 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1 8p21.3 3(2/1/0)

SNPs in LD with rs2279709 (count: 7) View in gBrowse (chr8:20175684..20183201 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016