BDgene

SNP Report

Basic Info
Name rs2279382 dbSNP Ensembl
Location chr6:122780228 - 122780228(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.257987
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000356535, ENST00000368444)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Iwayama, Y., 2010 T/G G P-value for allele test is 0.0099, p-value for genotype test...... P-value for allele test is 0.0099, p-value for genotype test is 0.0174, p-value is 0.1544 after correction by permutation test. More... showed nominal associations (P<0.05). However, after correct...... showed nominal associations (P<0.05). However, after correction by permutation tests, none remained significant. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FABP7 fatty acid binding protein 7, brain 6q22-q23 1(1/0/0)

SNPs in LD with rs2279382 (count: 0) View in gBrowse (chr6:122780228..122780228 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)