SNP Report

Basic Info

Name	rs2271933 dbSNP Ensembl
Location	chr1:31626924 - 31626924(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.439696
Functional Annotation	downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_variant. Polyphen Annotation: benign(ENST00000373706, ENST00000403528) SIFT Annotation: tolerated(ENST00000373706, ENST00000403528)
Consequence to Transcript	downstream_gene_variant(ENST00000373703, ENST00000461006, ENST00000478502, ENST00000485464, ENST00000489164); intron_variant(ENST00000373705, ENST00000468521); missense_variant(ENST00000373706, ENST00000403528); non_coding_transcript_variant(ENST00000468521)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PEF1	penta-EF-hand domain containing 1	1p34	Mapped by LD-proxy
HCRTR1	hypocretin (orexin) receptor 1	1p33	1(1/0/0)

SNPs in LD with rs2271933 (count: 0) View in gBrowse (chr1:31626924..31626924 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)