SNP Report

Basic Info

Name	rs2250334 dbSNP Ensembl
Location	chr14:38199788 - 38199788(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.49381
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000555655); non_coding_transcript_variant(ENST00000555655)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Gratacos, M.,2009			Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Recessive Model, P-value = 0.0389(corrected by genomic control, Reus), P-value = 0.0018(passed multiple testing correction, Madrid); OR(95% CI): Reus: 0.60 (0.39-0.94), Madrid: 0.48 (0.30-0.76) More...	Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SSTR1	somatostatin receptor 1	14q13	1(1/0/0)

SNPs in LD with rs2250334 (count: 1) View in gBrowse (chr14:38199788..38208330 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs4073844		intron_variant	0.96[CEU]; 0.85[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)