BDgene

SNP Report

Basic Info
Name rs2209263 dbSNP Ensembl
Location chr9:80911728 - 80911728(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.179712
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Cichon, S.,2011 A For GWAS, P-value = 0.0000344, OR=0.73, for Replication I, P...... For GWAS, P-value = 0.0000344, OR=0.73, for Replication I, P-value = 0.0436, OR=0.9, for combined sample(GWAS+Replication I), P-value = 0.0000558, OR=0.84 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TLE4 transducin-like enhancer of split 4 9q21.32 2(1/1/0)

SNPs in LD with rs2209263 (count: 15) View in gBrowse (chr9:80911728..81029557 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)