BDgene

SNP Report

Basic Info
Name rs2172835 dbSNP Ensembl
Location chr15:38697970 - 38697970(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.183706
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000318792)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ferreira, M. A.,2008 T Genotyped P value=7.5E-07, OR=0.853 in the combined analysis...... Genotyped P value=7.5E-07, OR=0.853 in the combined analysis of WTCCC, STEP-UCL and ED-DUB-STEP2 datasets. Genotyped P value=0.0314 in the WTCCC. Genotyped P value=0.0004 in the STEP-UCL. Genotyped P value=0.0011 in the ED-DUB-STEP2 dataset. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
C15orf53 chromosome 15 open reading frame 53 15q14 3(0/1/2)

SNPs in LD with rs2172835 (count: 0) View in gBrowse (chr15:38697970..38697970 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016