SNP Report

Basic Info

Name	rs2157221 dbSNP Ensembl
Location	chr22:34730799 - 34730799(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.277756
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Potash, J. B., 2008	T/G		Family-based P-value = 0.39 for all BPAD subjects, family-ba...... Family-based P-value = 0.39 for all BPAD subjects, family-based P-value = 0.71 for BPAD subjects with psychotic symptoms. Case-control P-value = 0.25 for all BPAD subjects, case-control P-value = 0.11 for BPAD subjects with psychotic symptoms. More...		Negative

SNP related genes (count: 0)

SNPs in LD with rs2157221 (count: 47) View in gBrowse (chr22:34637847..34742549 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 47)

rs_ID	Functional Annotation	r²[population]
rs5755254		1.0[CEU]; 1.0[TSI]
rs974223		0.843[CEU]
rs5994984	upstream_gene_variant	0.839[TSI]
rs5755245	upstream_gene_variant	1.0[CEU]
rs2071714	downstream_gene_variant	0.823[TSI]
rs4821280		0.843[CEU]
rs2413255		0.843[CEU]; 0.823[TSI]
rs5755183	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.839[TSI]
rs1010035	intron_variant; non_coding_transcript_variant	0.843[CEU]
rs7291061		0.843[CEU]; 0.823[TSI]
rs4821281		0.843[CEU]; 0.823[TSI]
rs1123411		0.889[CEU]
rs5755255		1.0[CEU]; 1.0[TSI]
rs5755239	intron_variant; non_coding_transcript_variant	0.941[CEU]
rs5749919	downstream_gene_variant	0.869[TSI]
rs5749941	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs2213448		0.843[CEU]; 0.823[TSI]
rs909565	downstream_gene_variant	0.869[TSI]
rs728308		0.843[CEU]
rs4821282		0.843[CEU]
rs4821293		0.941[CEU]
rs739066		1.0[CEU]
rs2413253		0.843[CEU]; 0.823[TSI]
rs4820157		0.843[CEU]
rs4821279		0.843[CEU]
rs974224		0.837[CEU]
rs9610076		0.829[CEU]
rs967918		1.0[CEU]; 1.0[TSI]
rs4821283		0.942[CEU]; 0.972[TSI]
rs5755256		0.943[CEU]
rs2413261	upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs5755202		0.843[CEU]; 0.823[TSI]
rs5755226		0.883[CEU]
rs1984387	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs5749938	downstream_gene_variant	0.829[CEU]
rs2899229	downstream_gene_variant	0.869[TSI]
rs5749925		0.843[CEU]
rs11705406		0.881[CEU]
rs4821287		0.843[CEU]
rs2205811		0.843[CEU]; 0.823[TSI]
rs2227074		0.843[CEU]
rs5749917	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.869[TSI]
rs7286170		0.843[CEU]; 0.823[TSI]
rs4256052	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.839[TSI]
rs4820154	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.839[TSI]
rs739061		0.883[CEU]; 0.971[TSI]
rs2227075	downstream_gene_variant	0.883[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)