BDgene

SNP Report

Basic Info
Name rs2111504 dbSNP Ensembl
Location chr19:32426549 - 32426549(1)
Variant Alleles T/A
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.182508
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000342179, ENST00000392250, ENST00000586427, ENST00000586987, ENST00000592503); non_coding_transcript_variant(ENST00000592503)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Smith, E. N.,2009 T AA only: Alelle association: MAF=0.23, Multidimensional scal...... AA only: Alelle association: MAF=0.23, Multidimensional scaling: OR=1.74, P-value = 0.0000015; LAMP adjusted: OR=1.73, P-value = 0.0000017; Genomic control: OR=1.66, P-value = 0.000005 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DPY19L3 dpy-19-like 3 (C. elegans) 19q13.11 1(0/0/1)

SNPs in LD with rs2111504 (count: 0) View in gBrowse (chr19:32426549..32426549 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)